http://uruknet.info/ News from occupied Iraq. Good site for alternative news in the middle east. Also covers news from other occupied regions in the Middle East.
http://www.ipsnews.net/ This is a global site, InterPress News, but it carries substantial alternative news from the occupied regions of the Middle East and Iran. Usually carries the work of Dahr Jamail.
http://dahrjamailiraq.com/ Dahr Jamails Middle East site. He has often traveled personally without being "embedded" to get the real story to Iraq, and also went to Lebanon during that uprising in 2006.
www.annainthemiddleeast.com Anna is a Jewish American who found out the truth about Israel and its occupation and has gone to assist first hand in the telling the truth from the West Bank, one of the occupied territories by Israel. Not really a news site, but a recording of her peace work there. Excellent and worthy of your time. I have met Anna personally. She has published a book, of her journals which I own and she posts her journaling at her site when she is over there.
http://arabwomanblues.blogspot.com/ Layla Anwar's blog of her personal experience as a citizen of Iraq. Testy site, good.
http://www.brusselstribunal.org/ Brussels Tribunal. Has good material from time to time on the Middle EAst and Iraq. An interesting site, period.
www.jpost.com Jerusalem Post. Daily newspaper
http://www.tehrantimes.com/ Tehran Times Daily Newspaper. Iran
http://www.iranonline.com/newsroom/ Iran Online Newsroom